Research Interests

My research focuses on the ecology of freshwater fishes. Research in my lab is conducted on a variety of organizational levels from the physiology of individuals to community dynamics over large spatial and temporal scales. Some recently completed projects included studies on developmental plasticity of physiological traits3, ecomorphology of sculpin2, evolution of reproductive isolation in topminnows, and techniques for assessing the magnitude of temporal change in communities5,6.

If you are a student interested in research opportunities in my lab, please contact me.

Electronic copies of recent publicatioins.

 

Hybrid Zone Dynamics and Reproductive Isolation

One of the greatest challenges in biology is to explain the levels and patterns of species diversity. Addressing this problem requires a multidisciplinary, integrative approach with a model system involving a range of temporal (from historical biogeography to individual life spans) and spatial (from range wide phenomena to individual interactions) scales. Hybrid zones, where closely related species interact and potentially hybridize, provide an ideal system in which to study the evolutionary processes that generate and maintain species diversity.
Hybrid F. euryzonus-F.olivaceus Fishes in the Fundulus notatus species complex are found throughout the Midwestern and Southern United States. The two most widely distributed members of this complex, F. notatus and F. olivaceus, occur throughout much of the Mississippi River drainage as well as the coastal drainages of the Gulf of Mexico. Throughout this range, these two species encounter one another in numerous contact zones. In contrast, other members of the complex of equal, or older evolutionary age, like F. euryzonus, are more narrowly distributed and endemic to single drainages. While members of the complex have similar morphologies and ecologies, their ranges differ markedly in size, making them an ideal group for these types of questions. Much of my research interest is currently focused on ecological and evolutionary questions regarding this system: 1) What is the nature of the numerous independent contact zones present throughout their ranges? 2) What are the relative strengths of the various prezygotic (reinforcement) and postzygotic (endogeonous and exogenous selection) barriers among these species? and 3) What factors explain the differences in distributional patterns between broadly distributed and narrowly endemic members of the complex?

 

Experimental Stream Array at the Natural Science Park

Student Projects

Graduate and undergraduate students in my lab are pursuing a variety of reserach questions on different ecological and evolutionary scales ranging from biogeography of darters to telemetry of adult and juvenile alligator gar. Listed below are my current students with summaries of their research focus.




 

John Spaeth -

Competition and resource use among ecologically-similar fish species in south Mississippi.

1) Is there evidence of dietary shift where species-pairs occur syntopically? 2) Do species feed selectively? 3) Does trophic partitioning occur during periods of decreased prey availability? 4) Do patterns of co-occurrence suggest partitioning of habitat resources in syntopy? If interspecific competition occurs in streams, then changes in diets and abundances will be observed in syntopy. Conversely, allotopic populations can serve as controls based on the assumption that those individuals will demonstrate food and habitat selectivity in the absence of competitors. My experimental approach involves monthly sampling aimed at collecting study pairs of similar species in syntopy and allotropy. In the second phase of the experiment, experimental streams will be used to perform a response surface design competition experiment aimed at quantifying intra- and interspecific competition among sand darters (Ammocrypta beanii and A. vivax).

 

Karen Persons -

Eustatically Driven Dispersal Corridors for Some Endemic Darters of the Mobile Bay Drainage System

Pleistocene glaciations are often cited as the major force shaping the modern distributions of North American freshwater fishes. These hypotheses seem to be strongly corroborated for fishes occurring above the Allegheny-Ouachita-Marathon continental suture; however, glacial effects do not easily explain the distribution of fishes found below the suture on the coastal plain. Glaciation, however, has a corollary in eustasy, or the global rise and fall of sea level. Eustatic effects are known to alter fluvial regimes during highstand or lowstand conditions, but how eustasy has affected the biogeography of freshwater fishes is largely unexplored. I am using the Nothonotus subgenus of darters to study biogeographic patterns in Gulf Coast drainages. Specifically, I ask if morphometrics and nuptial color patternation produce a phylogeny that will resolve the placement of the members of subgenus relative to one other? 2) Is there a preference for large substrates in their habitats? 3) How did the species assigned to this subgenus reach their present day distributions?

 

Paul Mickle -

Status and viability of Alabama shad (Alosa alabamae)

Alabama shad (Alosa alabamae) is an anadromous fish listed by NMFS as a candidate species in 1997 (also a USFWS candidate species). Its closest relative is the American shad (A. sapidissima) of Atlantic drainages. Once abundant in the Gulf of Mexico and the Mississippi River drainages, numerous populations have been extirpated with the remaining populations small and isolated. Based on the distribution of extant populations, factors affecting freshwater life stages are likely the primary causes of declines in A. alabamae. The presumed culprits are primarily dams and locks, but also siltation, water pollution, and dredging of sandbars used for. The far-reaching research objectives have been to: 1) determine migration and spawn timing, age of spawning fish, spawning locations, and juvenile migration patterns and growth rates within the drainage, 2) evaluate habitat selection by juveniles and adults , 3) compare habitat use in the Pascagoula River drainage to that used in other drainages, 4) recommend fish and habitat sampling protocols for use with this species in other drainages throughout its range, 5) develop an index of A. alabamae abundance in the Pascagoula River drainage, and 6) use population modeling to identify sensitive life stages to target for future research and conservation actions.

 

Justin Bishop -

Movement, dispersal, home range estimates and habitat use of alligator gar (Atractosteus spatula)

Alligator Gar Surgical implantation of radio transmitter The alligator gar (Atractosteus spatula) historically ranged throughout much of the lower Mississippi drainage and the gulf coast of Mexico to Veracruz. Within the Mississippi River drainage, populations existed as far north as the lower reaches of the Missouri and Ohio Rivers, as far west as the Red River drainage and Lake Texoma and as far east as the Ecofina River in the panhandle of Florida. Alligator gar have historically supported a fishery in the White River system of Arkansas, is a highly valued food fish in northeastern Mexico and a sport fish in parts of the southeastern United States. Due to habitat alteration in the north and fishing pressure in the south, populations of alligator gar are declining throughout much of the range. Once considered abundant, many northern and western populations in the Mississippi River drainage are thought to have been extirpated. Restoration efforts are underway in some of these areas but basic knowledge to alligator gar ecology, population structure and life history are impeding conservation efforts. The purpose of my research is to assess movement, dispersal and habitat use in adult and hatchery reared juvenile alligator gar. I am working with researchers at the Private John Allen Fish Hatchery (Tupelo, MS) and the Tennessee Department of Natural Resources on adult and juvenile telemetry studies to address these questions.

 


U.S.M. Museum of Ichthyology

USM Museum of Ichthyology I am also curator of the USM Museum of Ichthyology. The collection is an invaluable resource for students and researchers interested in ichthyology. The museum currently containes over 30,000 lots and 500,000 specimens representing approximately 700 taxa. While most of the collection contains fishes from the southeastern US, efforts are underway to add a number of unique collections from Honduras.

 

 

 

Recent Publications (last 5 years, for a complete list, see my CV)

  1. Vigueira, P., Schaefer, J.F., Kreiser, B.R., Duvernell, D. 2007. Tests of reproductive isolation among species in the Fundulus notatus (Cyprinodontiformes: Fundulidae) species complex. Evolutionary Ecology doi:10.1007/s10682-007-9158-8.

  2. Lutterschmidt, W.I, Schaefer J.F., and Furrillio, R. 2007. Relationships between parasite load and physiological performance (CTMax and endurance) of two Centrarchids (Lepomis megalotis and Lepomis macrochirus). In press, Journal of Comparative Parasitology.

  3. Duvernell, D., Schaefer, J.F. and Ravenelli, A. 2007. Hybridization and Introgression Among Syntopic Populations of the Topminnows Fundulus notatus and F. olivaceus in Southern Illinois. Journal of Evolutionary Biology 20: 152-164

  4. Matthews, W.J. K. B. Gido, G. P. Garrett, F. P. Gelwick, J. Stewart, and J. Schaefer. 2006. Modular experimental riffle-pool stream system. Transactions of the American Fisheries Society. 135:1559-1566.

  5. Kerfoot, J.R. and Schaefer, J.F. 2006. Ecomorphology and habitat use by two Cottus species. Environmental Biology of Fishes: 76:1-13.

  6. Schaefer, J.F. and Ryan, A. 2006. Developmental plasticity in the thermal tolerance of zebrafish (Danio rerio). Journal of Fish Biology 69:722-734.

  7. Schaefer, J.F. 2006. A simple and economical method for precise, programmable thermal regimes in recirculating aquatic mesocosms. North American Journal of Aquaculture. 68:240-244.

  8. Schaefer, J.F., Mickle, P., Spaeth, J., Zuber, B., Matamoros, W., Adams, S., Kreiser, B., Vigueira, P. 2006. Effects of hurricane Katrina on the fish fauna of the Pascagoula drainage. Proceedings of the Mississippi Water Resources Board 36:62-68.

  9. Schaefer, J.F., Gido, K.G. and Smith, M. 2005. A test for community change using a null model approach. Ecological Appliations 15(5) 1761-1771.

  10. Gido, K.B., Schaefer,J.F. and Pigg, J. 2004. Patterns of fish invasions in the Great Plains of North America. Biological Conservation 118:121-131.

  11. Schaefer, J.F., Kerfoot, J.R. 2004. Fish assemblage change in an adventitious stream: Landscape perspectives. American Midland Naturalist. 151(1):143-155.

  12. Schaefer, J.F., Gido, K.B., Spooner, D. Marsh-Matthews, E. 2003. Effects of barriers and thermal refugia on local movement of the threatened leopard darter (Percina pantherina). Environmental Biology of Fishes. 66:391-400.

  13. Schaefer, J.F. 2001. Riffles as barriers to inter-pool movement by three cyprinids (Notropis boops, Campostoma anomalum and Cyprinella venusta). Freshwater Biology. 46:379-388.